Inicio  /  Computation  /  Vol: 5 Par: 3 (2017)  /  Artículo
ARTÍCULO
TITULO

Anomalous Diffusion within the Transcriptome as a Bio-Inspired Computing Framework for Resilience

William Seffens    

Resumen

Much of biology-inspired computer science is based on the Central Dogma, as implemented with genetic algorithms or evolutionary computation. That 60-year-old biological principle based on the genome, transcriptome and proteasome is becoming overshadowed by a new paradigm of complex ordered associations and connections between layers of biological entities, such as interactomes, metabolomics, etc. We define a new hierarchical concept as the ?Connectosome?, and propose new venues of computational data structures based on a conceptual framework called ?Grand Ensemble? which contains the Central Dogma as a subset. Connectedness and communication within and between living or biology-inspired systems comprise ensembles from which a physical computing system can be conceived. In this framework the delivery of messages is filtered by size and a simple and rapid semantic analysis of their content. This work aims to initiate discussion on the Grand Ensemble in network biology as a representation of a Persistent Turing Machine. This framework adding interaction and persistency to the classic Turing-machine model uses metrics based on resilience that has application to dynamic optimization problem solving in Genetic Programming.

 Artículos similares

       
 
Paola Zola, Guglielmo Cola, Michele Mazza and Maurizio Tesconi    
Tracking information diffusion is a non-trivial task and it has been widely studied across different domains and platforms. The advent of social media has led to even more challenges, given the higher speed of information propagation and the growing impa... ver más
Revista: Applied Sciences

 
Marilena Pannone, Domenica Mirauda, Annamaria De Vincenzo and Bruno Molino    
A first-order analytical solution is proposed for the actual depth-averaged concentration of tracers in shallow river flows in the presence of large Peclet numbers (defined as the ratio of section-averaged velocity times channel width to turbulent diffus... ver más
Revista: Water

 
Anna Suzuki, Sergei Fomin, Vladimir Chugunov and Toshiyuki Hashida    
Deep geological repositories for nuclear wastes consist of both engineered and natural geologic barriers to isolate the radioactive material from the human environment. Inappropriate repositories of nuclear waste would cause severe contamination to nearb... ver más
Revista: Water

 
William Seffens    
-
Revista: Computation

 
Alexandre F. B. Duarte, Jessica de M. Gatti Pereira, Marcelo Kaminski Lenzi, Giane Gonçalves, Roberto Rossato, Ervin Kaminski Lenzi     Pág. 657 - 662
We investigate for the diffusion equation the differences manifested by the solutions when three different types of spatial differential operators of noninteger (or fractional) order are considered for a limited and unlimited region.  In all cases, ... ver más