Inicio  /  Applied Sciences  /  Vol: 13 Par: 12 (2023)  /  Artículo
ARTÍCULO
TITULO

Investigation into the Binding Site of (-)-Spirobrassinin for Herbicidal Activity Using Molecular Docking and Molecular Dynamics Simulations

Yu Wang    
Baozhu Dong    
Dong Wang    
Xinyu Jia    
Qian Zhang    
Wanyou Liu and Hongyou Zhou    

Resumen

(-)-Spirobrassinin, a glucosinolate compound from Brassicaceae plants, has shown inhibitory effects on weeds. However, its specific target sites are not well explored. This study used molecular docking, molecular dynamics simulations, and biological experiments to investigate (-)-Spirobrassinin?s target sites. The inhibitory effects of (-)-Spirobrassinin were observed on various enzymes crucial for plant metabolic pathways, including dihydroxyacid dehydrogenase, 4-hydroxyphenylpyruvate dioxygenase, protoporphyrinogen oxidase, and acetolactate synthase. Additionally, it disrupts the metabolism of vital phytohormones, namely abscisic acid and gibberellin. Molecular dynamics simulations revealed stable interactions between (-)-Spirobrassinin and specific residues (Phe270 and Phe261) of the photosystem II D1, involving electrostatic, hydrophobic, and van der Waals forces. This study provides valuable insights into (-)-Spirobrassinin?s mode of action, highlighting its potential as a natural herbicide from Brassicaceae plants.

 Artículos similares

       
 
Pavel V. Zakharov, Elena A. Korznikova, Artem A. Izosimov and Andrey S. Kochkin    
This study examines the mechanism of nonlinear supratransmission (NST), which involves the transfer of disturbance to discrete media at frequencies not supported by the structure. We considered a model crystal with A3B stoichiometry. The investigation wa... ver más
Revista: Computation

 
Hongxia Li, Tianyang Yang, Xuewen Guo, Yupeng Wu, Jun Yan and Qingzhen Lu    
Deep-water flexible composite pipes have been widely employed in the domain of deep-water oil and gas transportation, and high-density polyethylene (HDPE) is used to seal the inner sheath of internal oil and gas media containing H2S and CH4, due to its f... ver más

 
Bo Liu, Yali Yan, Nan Zhang, Huayang Guo, Baosuo Liu, Jingwen Yang, Kecheng Zhu and Dianchang Zhang    
Species markers can be quickly and accurately assessed using DNA barcoding. We investigated samples from the parrotfish family Scaridae using DNA barcoding in Hainan. A total of 401 DNA barcodes were analyzed, including 51 new barcodes generated from fre... ver más

 
Abdalrahman Khaled Mohammad, Charles Sumeray, Maximilian Richmond, Justin Hinshelwood and Aritra Ghosh    
This study explored the applications of liquid hydrogen (LH2) in aerospace projects, followed by an investigation into the efficiency of ramjets, scramjets, and turbojets for hypersonic flight and the impact of grey, blue, and green hydrogen as an altern... ver más
Revista: Aerospace

 
Gianpaolo Zammarchi, Claudio Conversano and Claudia Pisanu    
Psychiatric disorders are among the top leading causes of the global health-related burden. Comorbidity with cardiometabolic and sleep disorders contribute substantially to this burden. While both genetic and environmental factors have been suggested to ... ver más
Revista: Algorithms