Resumen
Waterbirds may facilitate pathogen transport in rice fields from autumn to winter. This study investigated pathogen dynamics in two types of rice fields, those considered conventionally managed and a low-external-input-sustainable-agriculture (LEISA) rice system in the Mississippi Alluvial Valley, winter 2017?2018. In each system, fields were (1) left unflooded or (2) flooded from November to March. Fecal indicator and pathogenic bacteria (enterococci, Clostridium perfringens, Escherichia coli, Salmonella spp., and Campylobacter spp.) were quantified in soil before and after winter flooding, and bird fecal matter estimated on both farm types. Water samples were tested for enterococci, C. perfringens and E. coli before fields were drained. The LEISA flooded fields had greater detections of C. perfringens in the soil than conventional non-flooded fields. There was an observed decreasing trend of C. perfringens detection associated with lower bird abundances among treatment groups. All observed pathogen levels in both systems were below EPA standards. Results suggest that long-term waterbird stopovers can influence pathogen indicators in soil, but not at levels to threaten human and environmental health standards. Future studies should focus on long-term monitoring of pathogen introduction in rice fields that harbor wintering waterfowl or other waterbirds.